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Open access segmentations of intraoperative brain tumor ultrasound images

Author(s): Behboodi B; Carton FX; Chabanas M; de Ribaupierre S; Solheim O; Munkvold BKR; Rivaz H; Xiao Y; Reinertsen I; ...

Purpose: Registration and segmentation of magnetic resonance (MR) and ultrasound (US) images could play an essential role in surgical planning and resectioning brain tumors. However, validating the ...

Article GUID: 39047165


Virtual and Augmented Reality in Ventriculostomy: A Systematic Review

Author(s): Alizadeh M; Xiao Y; Kersten-Oertel M;

Background: Ventriculostomy, one of the most common neurosurgical procedures, involves inserting a draining catheter into the brain's ventricular system to alleviate excessive cerebrospinal fluid accumulation. Traditionally, this procedure has relied on ...

Article GUID: 38823448


SCANED: Siamese collateral assessment network for evaluation of collaterals from ischemic damage

Author(s): Aktar M; Xiao Y; Tehrani AKZ; Tampieri D; Rivaz H; Kersten-Oertel M;

This study conducts collateral evaluation from ischemic damage using a deep learning-based Siamese network, addressing the challenges associated with a small and imbalanced dataset. The collateral network provides an alternative oxygen and nutrient supply p ...

Article GUID: 38364600


PILLAR: ParaspInaL muscLe segmentAtion pRoject - a comprehensive online resource to guide manual segmentation of paraspinal muscles from magnetic resonance imaging

Author(s): Anstruther M; Rossini B; Zhang T; Liang T; Xiao Y; Fortin M;

Background: There is an increasing interest in assessing paraspinal morphology and composition in relation to low back pain (LBP). However, variations in methods and segmentation protocols contribute to the inconsistent findings in the literature. We presen ...

Article GUID: 37996857


A population-averaged structural connectomic brain atlas dataset from 422 HCP-aging subjects

Author(s): Xiao Y; Gilmore G; Kai J; Lau JC; Peters T; Khan AR;

Population-averaged brain atlases, that are represented in a standard space with anatomical labels, are instrumental tools in neurosurgical planning and the study of neurodegenerative conditions. Traditional brain atlases are primarily derived from anatomic ...

Article GUID: 37663773


A dataset of multi-contrast unbiased average MRI templates of a Parkinson's disease population

Author(s): Madge V; Fonov VS; Xiao Y; Zou L; Jackson C; Postuma RB; Dagher A; Fon EA; Collins DL;

Parkinson's disease (PD) is a complex neurodegenerative disorder affecting regions such as the substantia nigra (SN), red nucleus (RN) and locus coeruleus (LC). Processing MRI data from patients with PD requires anatomical structural references for spat ...

Article GUID: 37213552


Deep learning for collateral evaluation in ischemic stroke with imbalanced data

Author(s): Aktar M; Reyes J; Tampieri D; Rivaz H; Xiao Y; Kersten-Oertel M;

Purpose: Collateral evaluation is typically done using visual inspection of cerebral images and thus suffers from intra- and inter-rater variability. Large open databases of ischemic stroke patients are rare, limiting the use of deep learni ...

Article GUID: 36635594


Robust landmark-based brain shift correction with a Siamese neural network in ultrasound-guided brain tumor resection

Author(s): Pirhadi A; Salari S; Ahmad MO; Rivaz H; Xiao Y;

Purpose: In brain tumor surgery, tissue shift (called brain shift) can move the surgical target and invalidate the surgical plan. A cost-effective and flexible tool, intra-operative ultrasound (iUS) with robust image registration algorithms can effectively ...

Article GUID: 36306056


DiffeoRaptor: diffeomorphic inter-modal image registration using RaPTOR

Author(s): Masoumi N; Rivaz H; Ahmad MO; Xiao Y;

Purpose: Diffeomorphic image registration is essential in many medical imaging applications. Several registration algorithms of such type have been proposed, but primarily for intra-contrast alignment. Currently, efficient inter-modal/contrast diffeomorphic ...

Article GUID: 36173541


Statistical morphological analysis reveals characteristic paraspinal muscle asymmetry in unilateral lumbar disc herniation

Author(s): Xiao Y; Fortin M; Ahn J; Rivaz H; Peters TM; BattiƩ MC;

Growing evidence suggests an association of lumbar paraspinal muscle morphology with low back pain (LBP) and lumbar pathologies. Unilateral spinal disorders provide unique models to study this association, with implications for diagnosis, prognosis, and man ...

Article GUID: 34341427


Characterizing white matter alterations subject to clinical laterality in drug-naïve de novo Parkinson's disease

Author(s): Xiao Y; Peters TM; Khan AR;

Parkinson's disease (PD) is a progressive neurodegenerative disorder that is characterized by a range of motor and nonmotor symptoms, often with the motor dysfunction initiated unilaterally. Knowledge regarding disease-related alterations in white matte ...

Article GUID: 34106502


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