Keyword search (4,163 papers available)

"Dugré M" Authored Publications:

Title Authors PubMed ID
1 An analysis of performance bottlenecks in MRI preprocessing Dugré M; Chatelain Y; Glatard T; 40072903
ENCS
2 Predicting Parkinson's disease trajectory using clinical and functional MRI features: A reproduction and replication study Germani E; Bhagwat N; Dugré M; Gau R; Montillo AA; Nguyen KP; Sokolowski A; Sharp M; Poline JB; Glatard T; 39982930
ENCS
3 Longitudinal brain structure changes in Parkinson's disease: A replication study Sokolowski A; Bhagwat N; Chatelain Y; Dugré M; Hanganu A; Monchi O; McPherson B; Wang M; Poline JB; Sharp M; Glatard T; 38295031
ENCS
4 Data and Tools Integration in the Canadian Open Neuroscience Platform Poline JB; Das S; Glatard T; Madjar C; Dickie EW; Lecours X; Beaudry T; Beck N; Behan B; Brown ST; Bujold D; Beauvais M; Caron B; Czech C; Dharsee M; Dugré M; Evans K; Gee T; Ippoliti G; Kiar G; Knoppers BM; Kuehn T; Le D; Lo D; Mazaheri M; MacFarlane D; Muja N; O' Brien EA; O' Callaghan L; Paiva S; Park P; Quesnel D; Rabelais H; Rioux P; Legault M; Tremblay-Mercier J; Rotenberg D; Stone J; Strauss T; Zaytseva K; Zhou J; Duchesne S; Khan AR; Hill S; Evans AC; 37024500
ENCS
5 An analysis of security vulnerabilities in container images for scientific data analysis Kaur B; Dugré M; Hanna A; Glatard T; 34080631
ENCS

 

Title:Predicting Parkinson's disease trajectory using clinical and functional MRI features: A reproduction and replication study
Authors:Germani EBhagwat NDugré MGau RMontillo AANguyen KPSokolowski ASharp MPoline JBGlatard T
Link:https://pubmed.ncbi.nlm.nih.gov/39982930/
DOI:10.1371/journal.pone.0317566
Publication:PloS one
Keywords:
PMID:39982930 Category: Date Added:2025-02-21
Dept Affiliation: ENCS
1 Univ Rennes, Inria, CNRS, Inserm, Rennes, France.
2 Department of Neurology and Neurosurgery, McGill University, Montreal, Canada.
3 Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada.
4 Lyda Hill Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, TX, United States of America.

Description:

Parkinson's disease (PD) is a common neurodegenerative disorder with a poorly understood physiopathology and no established biomarkers for the diagnosis of early stages and for prediction of disease progression. Several neuroimaging biomarkers have been studied recently, but these are susceptible to several sources of variability related for instance to cohort selection or image analysis. In this context, an evaluation of the robustness of such biomarkers to variations in the data processing workflow is essential. This study is part of a larger project investigating the replicability of potential neuroimaging biomarkers of PD. Here, we attempt to fully reproduce (reimplementing the experiments with the same methods, including data collection from the same database) and replicate (different data and/or method) the models described in (Nguyen et al., 2021) to predict individual's PD current state and progression using demographic, clinical and neuroimaging features (fALFF and ReHo extracted from resting-state fMRI). We use the Parkinson's Progression Markers Initiative dataset (PPMI, ppmi-info.org), as in (Nguyen et al., 2021) and aim to reproduce the original cohort, imaging features and machine learning models as closely as possible using the information available in the paper and the code. We also investigated methodological variations in cohort selection, feature extraction pipelines and sets of input features. Different criteria were used to evaluate the reproduction attempt and compare the results with the original ones. Notably, we obtained significantly better than chance performance using the analysis pipeline closest to that in the original study (R2 > 0), which is consistent with its findings. In addition, we performed a partial reproduction using derived data provided by the authors of the original study, and we obtained results that were close to the original ones. The challenges encountered while attempting to reproduce (fully and partially) and replicating the original work are likely explained by the complexity of neuroimaging studies, in particular in clinical settings. We provide recommendations to further facilitate the reproducibility of such studies in the future.





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