Keyword search (4,163 papers available)

"Noronha AM" Authored Publications:

Title Authors PubMed ID
1 Enhanced binding of guanylated poly(A) RNA by the LaM domain of LARP1 Kozlov G; Jiang J; Rutherford T; Noronha AM; Wilds CJ; Gehring K; 39016322
CHEMBIOCHEM
2 Structural basis of 3'-end poly(A) RNA recognition by LARP1 Kozlov G; Mattijssen S; Jiang J; Nyandwi S; Sprules T; Iben JR; Coon SL; Gaidamakov S; Noronha AM; Wilds CJ; Maraia RJ; Gehring K; 35979957
CHEMBIOCHEM
3 Hydrated electrons induce the formation of interstrand cross-links in DNA modified by cisplatin adducts Behmand B; Noronha AM; Wilds CJ; Marignier JL; Mostafavi M; Wagner JR; Hunting DJ; Sanche L; 32211848
CHEMBIOCHEM
4 O4-alkyl-2'-deoxythymidine cross-linked DNA to probe recognition and repair by O6-alkylguanine DNA alkyltransferases. McManus FP, O'Flaherty DK, Noronha AM, Wilds CJ 22850722
CHEMBIOCHEM
5 Preparation of covalently linked complexes between DNA and O(6)-alkylguanine-DNA alkyltransferase using interstrand cross-linked DNA. McManus FP, Khaira A, Noronha AM, Wilds CJ 23347328
CHEMBIOCHEM
6 Structural basis of interstrand cross-link repair by O6-alkylguanine DNA alkyltransferase. Denisov AY, McManus FP, O'Flaherty DK, Noronha AM, Wilds CJ 28937154
CHEMBIOCHEM
7 Influence of nucleotide modifications at the C2' position on the Hoogsteen base-paired parallel-stranded duplex of poly(A) RNA. Copp W, Denisov AY, Xie J, Noronha AM, Liczner C, Safaee N, Wilds CJ, Gehring K 28973475
CHEMBIOCHEM
8 Altering Residue 134 Confers an Increased Substrate Range of Alkylated Nucleosides to the E. coli OGT Protein. Schoonhoven NM, O'Flaherty DK, McManus FP, Sacre L, Noronha AM, Kornblatt MJ, Wilds CJ 29137116
CHEMBIOCHEM

 

Title:Structural basis of 3'-end poly(A) RNA recognition by LARP1
Authors:Kozlov GMattijssen SJiang JNyandwi SSprules TIben JRCoon SLGaidamakov SNoronha AMWilds CJMaraia RJGehring K
Link:https://pubmed.ncbi.nlm.nih.gov/35979957/
DOI:10.1093/nar/gkac696
Publication:Nucleic acids research
Keywords:
PMID:35979957 Category: Date Added:2022-08-18
Dept Affiliation: CHEMBIOCHEM
1 Department of Biochemistry, McGill University, Montréal, Canada.
2 Centre de recherche en biologie structurale, McGill University, Montréal, Canada.
3 Intramural Research Program, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, United States.
4 Quebec/Eastern Canada NMR Centre, McGill University, Montréal, Canada.
5 Department of Chemistry and Biochemistry, Concordia University, Montréal, Canada.

Description:

La-related proteins (LARPs) comprise a family of RNA-binding proteins involved in a wide range of posttranscriptional regulatory activities. LARPs share a unique tandem of two RNA-binding domains, La motif (LaM) and RNA recognition motif (RRM), together referred to as a La-module, but vary in member-specific regions. Prior structural studies of La-modules reveal they are pliable platforms for RNA recognition in diverse contexts. Here, we characterize the La-module of LARP1, which plays an important role in regulating synthesis of ribosomal proteins in response to mTOR signaling and mRNA stabilization. LARP1 has been well characterized functionally but no structural information exists for its La-module. We show that unlike other LARPs, the La-module in LARP1 does not contain an RRM domain. The LaM alone is sufficient for binding poly(A) RNA with submicromolar affinity and specificity. Multiple high-resolution crystal structures of the LARP1 LaM domain in complex with poly(A) show that it is highly specific for the RNA 3'-end, and identify LaM residues Q333, Y336 and F348 as the most critical for binding. Use of a quantitative mRNA stabilization assay and poly(A) tail-sequencing demonstrate functional relevance of LARP1 RNA binding in cells and provide novel insight into its poly(A) 3' protection activity.





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