Keyword search (4,164 papers available)

"Orabi EA" Authored Publications:

Title Authors PubMed ID
1 Modeling CH sub 3 /sub SOH-aromatic complexes to probe cysteine sulfenic acid-aromatic interactions in proteins Orabi EA; English AM; 40994121
CHEMBIOCHEM
2 Modeling predicts facile release of nitrite but not nitric oxide from the thionitrate CH3SNO2 with relevance to nitroglycerin bioactivation Parmar V; Orabi EA; English AM; Peslherbe GH; 39738238
CERMM
3 Ammonium transporters achieve charge transfer by fragmenting their substrate Wang S; Orabi EA; Baday S; Bernèche S; Lamoureux G; 22631217
CERMM
4 New Megastigmane and Polyphenolic Components of Henna Leaves and Their Tumor-Specific Cytotoxicity on Human Oral Squamous Carcinoma Cell Lines Orabi MAA; Orabi EA; Awadh AAA; Alshahrani MM; Abdel-Wahab BA; Sakagami H; Hatano T; 38001804
CHEMBIOCHEM
5 Structural determination and anticholinesterase assay of C-glycosidic ellagitannins from Lawsonia inermis leaves: A study supported by DFT calculations and molecular docking Orabi MAA; Orabi EA; Abdel-Sattar ES; English AM; Hatano T; Elimam H; 36423882
CHEMBIOCHEM
6 Modeling Shows that Rotation about the Peroxide O-O Bond Assists Protein and Lipid Functional Groups in Discriminating between H2O2 and H2O Orabi EA; English AM; 33356279
CHEMBIOCHEM
7 Drude polarizable force field for cation-π interactions of alkali and quaternary ammonium ions with aromatic amino acid side chains Orabi EA; Davis RL; Lamoureux G; 31652004
CERMM
8 Computational insight into hydrogen persulfide and a new additive model for chemical and biological simulations Orabi EA; Peslherbe GH; 31297500
CHEMBIOCHEM
9 Expanding the range of binding energies and oxidizability of biologically relevant S-aromatic interactions: imidazolium and phenolate binding to sulfoxide and sulfone Orabi EA; English AM; 31214677
CHEMBIOCHEM
10 Predicting structural and energetic changes in Met-aromatic motifs on methionine oxidation to the sulfoxide and sulfone Orabi EA; English AM; 30168822
CHEMBIOCHEM

 

Title:Modeling predicts facile release of nitrite but not nitric oxide from the thionitrate CH3SNO2 with relevance to nitroglycerin bioactivation
Authors:Parmar VOrabi EAEnglish AMPeslherbe GH
Link:https://pubmed.ncbi.nlm.nih.gov/39738238/
DOI:10.1038/s41598-024-80230-7
Publication:Scientific reports
Keywords:BioactivationNitric oxideNitriteNitroglycerinThionitrateVasodilation
PMID:39738238 Category: Date Added:2024-12-31
Dept Affiliation: CERMM
1 Department of Chemistry and Biochemistry, Centre for Research in Molecular Modeling (CERMM), Concordia University, 7141 Sherbrooke Street West, Montréal, QC, H4B 1R6, Canada.
2 Quebec Network for Research on Protein Function, Structure, and Engineering (PROTEO), Montréal, Canada.
3 Theoretical Molecular Biophysics Laboratory, National Heart, Lung and Blood Institute, National Institutes of Health, 10 Center Drive, Bethesda, MD, 20814, USA.
4 Department of Chemistry and Biochemistry, Centre for Research in Molecular Modeling (CERMM), Concordia University, 7141 Sherbrooke Street West, Montréal, QC, H4B 1R6, Canada. ann.english@concordia.ca.
5 Quebec Network for Research on Protein Function, Structure, and Engineering (PROTEO), Montréal, Canada. ann.english@concordia.ca.
6 Department of Chemistry and Biochemistry, Centre for Research in Molecular Modeling (CERMM), Concordia University, 7141 Sherbrooke Street West, Montréal, QC, H4B 1R6, Canada. gilles.peslherbe@concordia.ca.

Description:

Nitroglycerin is a potent vasodilator in clinical use since the late 1800s. It functions as a prodrug that is bioactivated by formation of an enzyme-based thionitrate, E-Cys-NO2. This intermediate reportedly decomposes to release NO and NO2- but their relative yields remain controversial. Hence, we determined barriers for NO and NO2- production from the model thionitrate, CH3SNO2, using comprehensive high-level quantum chemistry calculations [CCSD(T)//MP2/aug-cc-pVTZ]. We find that the sulfenyl nitrite, CH3SONO, readily releases NO on (S)O-N bond homolysis but CH3SONO formation from CH3SNO2 either by S-NO2 bond homolysis or concerted rearrangement faces prohibitively high barriers (?Hcalc/?Hcalc > 42 kcal/mol). Dramatically lower barriers (?Hcalc ~ 17-21 kcal/mol) control NO2- release from CH3SNO2 by gas-phase hydrolysis or nucleophilic attack by OH- or CH3S- on the sulfur atom within the C-S-NO2 molecular plane. Moreover, attack by either anion along the S-NO2 bond results in barrierless NO2- release (?Hcalc ~ 0 kcal/mol) since a s-hole (i.e., area of positive electrostatic potential) extends from this bond. Consistent with our high-level calculations, ALDH2 and GAPDH, enzymes implicated in nitroglycerin bioactivation via an E-Cys-NO2 intermediate, catalyze mainly or exclusively NO2- release from the prodrug.





BookR developed by Sriram Narayanan
for the Concordia University School of Health
Copyright © 2011-2026
Cookie settings
Concordia University