Keyword search (4,163 papers available)

"Zazubovich V" Authored Publications:

Title Authors PubMed ID
1 Nonphotochemical Spectral Hole Burning Study of Modified LH2 Complex from em Rbl. acidophilus /em : Do Parts of the Pigment Molecule Affect Small Light-Induced Structural Changes? Levenberg A; Trempe A; Lujan MA; Picorel R; Zazubovich V; 41802209
PHYSICS
2 Rigorous Quantum-Mechanical Modeling of Tunneling-Based Structural Changes Associated with Line Shifts in Optical Spectroscopy Experiments in Pigment-Protein Complexes Eng-Michell J; Yi B; Tan X; Garashchuk S; Zazubovich V; 41662623
PHYSICS
3 High-Resolution Frequency-Domain Spectroscopic and Modeling Studies of Photosystem I (PSI), PSI Mutants and PSI Supercomplexes Zazubovich V; Jankowiak R; 38612659
PHYSICS
4 Identification of Residues Potentially Involved in Optical Shifts in the Water-Soluble Chlorophyll a-Binding Protein through Molecular Dynamics Simulations Mai M; Zazubovich V; Mansbach RA; 38299975
PHYSICS
5 Frequency-Domain Spectroscopic Study of the Photosystem I Supercomplexes, Isolated IsiA Monomers, and the Intact IsiA Ring Reinot T; Khmelnitskiy A; Zazubovich V; Toporik H; Mazor Y; Jankowiak R; 36065077
PHYSICS
6 Functional analysis of low-grade glioma genetic variants predicts key target genes and transcription factors. Manjunath M; Yan J; Youn Y; Drucker KL; Kollmeyer TM; McKinney AM; Zazubovich V; Zhang Y; Costello JF; Eckel-Passow J; Selvin PR; Jenkins RB; Song JS; 33130899
PHYSICS
7 Bound detergent molecules in bacterial reaction centers facilitate detection of tetryl explosive. Modafferi D, Zazubovich V, Kálmán L 32632533
PHYSICS
8 Evidence of Simultaneous Spectral Hole Burning Involving Two Tiers of the Protein Energy Landscape in Cytochrome b6f. Shafiei G, Levenberg A, Lujan MA, Picorel R, Zazubovich V 31763829
PHYSICS
9 How Well Does the Hole-Burning Action Spectrum Represent the Site-Distribution Function of the Lowest-Energy State in Photosynthetic Pigment-Protein Complexes? Zazubovich V, Jankowiak R 31265294
CHEMISTRY
10 Low-temperature protein dynamics of the B800 molecules in the LH2 light-harvesting complex: spectral hole burning study and comparison with single photosynthetic complex spectroscopy. Grozdanov D, Herascu N, Reinot T, Jankowiak R, Zazubovich V 20166717
PHYSICS
11 Parameters of the protein energy landscapes of several light-harvesting complexes probed via spectral hole growth kinetics measurements. Herascu N, Najafi M, Amunts A, Pieper J, Irrgang KD, Picorel R, Seibert M, Zazubovich V 21391534
PHYSICS
12 Self-assembly and sensor response of photosynthetic reaction centers on screen-printed electrodes. Bhalla V, Zazubovich V 22027137
PHYSICS
13 Effects of the distributions of energy or charge transfer rates on spectral hole burning in pigment-protein complexes at low temperatures. Herascu N, Ahmouda S, Picorel R, Seibert M, Jankowiak R, Zazubovich V 22046956
PHYSICS
14 Spectral hole burning, recovery, and thermocycling in chlorophyll-protein complexes: distributions of barriers on the protein energy landscape. Najafi M, Herascu N, Seibert M, Picorel R, Jankowiak R, Zazubovich V 22957798
PHYSICS
15 Modeling of various optical spectra in the presence of slow excitation energy transfer in dimers and trimers with weak interpigment coupling: FMO as an example. Herascu N, Kell A, Acharya K, Jankowiak R, Blankenship RE, Zazubovich V 24506338
PHYSICS
16 On the Controversial Nature of the 825 nm Exciton Band in the FMO Protein Complex. Kell A, Acharya K, Zazubovich V, Jankowiak R 26269993
PHYSICS
17 Fluorescence line narrowing and Δ-FLN spectra in the presence of excitation energy transfer between weakly coupled chromophores. Zazubovich V 25369116
PHYSICS
18 Conformational Changes in Pigment-Protein Complexes at Low Temperatures-Spectral Memory and a Possibility of Cooperative Effects. Najafi M, Herascu N, Shafiei G, Picorel R, Zazubovich V 25985255
PHYSICS
19 Monte Carlo Modeling of Spectral Diffusion Employing Multiwell Protein Energy Landscapes: Application to Pigment-Protein Complexes Involved in Photosynthesis. Najafi M, Zazubovich V 26020801
PHYSICS
20 On the Conflicting Estimations of Pigment Site Energies in Photosynthetic Complexes: A Case Study of the CP47 Complex. Reinot T, Chen J, Kell A, Jassas M, Robben KC, Zazubovich V, Jankowiak R 27279733
PHYSICS
21 A simple and efficient method to prepare pure dimers and monomers of the cytochrome b 6 f complex from spinach. Luján MA, Lorente P, Zazubovich V, Picorel R 28374305
PHYSICS
22 Probing Energy Landscapes of Cytochrome b6f with Spectral Hole Burning: Effects of Deuterated Solvent and Detergent. Levenberg A, Shafiei G, Lujan MA, Giannacopoulos S, Picorel R, Zazubovich V 28956922
PHYSICS
23 Spectral Hole Burning in Cyanobacterial Photosystem I with P700 in Oxidized and Neutral States. Herascu N, Hunter MS, Shafiei G, Najafi M, Johnson TW, Fromme P, Zazubovich V 27661089
CHEMBIOCHEM

 

Title:Frequency-Domain Spectroscopic Study of the Photosystem I Supercomplexes, Isolated IsiA Monomers, and the Intact IsiA Ring
Authors:Reinot TKhmelnitskiy AZazubovich VToporik HMazor YJankowiak R
Link:https://pubmed.ncbi.nlm.nih.gov/36065077/
DOI:10.1021/acs.jpcb.2c04829
Publication:The journal of physical chemistry. B
Keywords:
PMID:36065077 Category: Date Added:2022-09-06
Dept Affiliation: PHYSICS
1 Department of Physics, Concordia University, Montreal, H4B 1R6, Canada.
2 School of Molecular Sciences and Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona 85287, United States.

Description:

The PSI3-IsiA18 supercomplex is one of the largest and most complicated assemblies in photosynthesis. The IsiA ring, composed of 18 IsiA monomers (IsiA18) surrounding the PSI trimer (PSI3), forms under iron-deficient conditions in cyanobacteria and acts as a peripheral antenna. Based on the supercomplex structure recently determined via cryo-EM imaging, we model various optical spectra of the IsiA monomers and IsiA18 ring. Comparison of the absorption and emission spectra of the isolated IsiA monomers and the full ring reveals that about 2.7 chlorophylls (Chls) are lost in the isolated IsiA monomers. The best fits for isolated monomers spectra are obtained assuming the absence of Chl 508 and Chl 517 and 70% loss of Chl 511. The best model describing all three hexamers and the entire ring suggests that the lowest energy pigments are Chls 511, 514, and 517. Based on the modeling results presented in this work, we conclude that there are most likely three entry points for EET from the IsiA6 hexamer to the PSI core monomer, with two of these entry points likely being located next to each other (i.e., nine entry points from IsiA18 to the PSI3 trimer). Finally, we show that excitation energy transfer inside individual monomers is fast (<2 ps at T = 5 K) and at least 20 times faster than intermonomer energy transfer.





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