Keyword search (4,164 papers available)

"Antibiotic" Keyword-tagged Publications:

Title Authors PubMed ID
1 Large scale laboratory evolution uncovers clinically relevant collateral antibiotic sensitivity Chowdhury FR; Banari V; Lesnic V; Zhanel GG; Findlay BL; 40615056
BIOLOGY
2 Global antibiotic hotspots and risks: A One Health assessment Yan B; Huang F; Ying J; Zhou D; Norouzi S; Zhang X; Wang B; Liu F; 40469481
CHEMBIOCHEM
3 De novo evolution of antibiotic resistance to Oct-TriA1 Chowdhury FR; Mercado LD; Kharitonov K; Findlay BL; 39832423
BIOLOGY
4 In silico molecular targets, docking, dynamics simulation and physiologically based pharmacokinetics modeling of oritavancin Fatoki TH; Balogun TC; Ojewuyi AE; Omole AC; Olukayode OV; Adewumi AP; Umesi AJ; Ijeoma NP; Apooyin AE; Chinedu CP; Idowu IE; Isah MJ; 39439008
CHEMBIOCHEM
5 Discovery of an adjuvant that resensitizes polymyxin B-resistant bacteria Mahdavi M; Findlay BL; 38096681
BIOLOGY
6 Fitness Costs of Antibiotic Resistance Impede the Evolution of Resistance to Other Antibiotics Chowdhury FR; Findlay BL; 37726252
BIOLOGY
7 A resistome survey across hundreds of freshwater bacterial communities reveals the impacts of veterinary and human antibiotics use Kraemer SA; Barbosa da Costa N; Oliva A; Huot Y; Walsh DA; 36338036
BIOLOGY
8 Sublethal Paraquat Confers Multidrug Tolerance in Pseudomonas aeruginosa by Inducing Superoxide Dismutase Activity and Lowering Envelope Permeability. Martins D, McKay GA, English AM, Nguyen D 33101252
CHEMBIOCHEM
9 Comprehensive evaluation of adsorption performances of carbonaceous materials for sulfonamide antibiotics removal. Luo B, Huang G, Yao Y, An C, Li W, Zheng R, Zhao K 32886308
CONCORDIA
10 Transcriptomic analysis suggests the inhibition of DNA damage repair in green alga Raphidocelis subcapitata exposed to roxithromycin. Guo J, Bai Y, Chen Z, Mo J, Li Q, Sun H, Zhang Q 32505758
CHEMISTRY
11 Effect and ameliorative mechanisms of polyoxometalates on the denitrification under sulfonamide antibiotics stress. Guo H, Chen Z, Lu C, Guo J, Li H, Song Y, Han Y, Hou Y 32145698
ENCS
12 Antibiotic Pollution in the Environment: From Microbial Ecology to Public Policy. Kraemer SA, Ramachandran A, Perron GG 31234491
BIOLOGY

 

Title:In silico molecular targets, docking, dynamics simulation and physiologically based pharmacokinetics modeling of oritavancin
Authors:Fatoki THBalogun TCOjewuyi AEOmole ACOlukayode OVAdewumi APUmesi AJIjeoma NPApooyin AEChinedu CPIdowu IEIsah MJ
Link:https://pubmed.ncbi.nlm.nih.gov/39439008/
DOI:10.1186/s40360-024-00804-z
Publication:BMC pharmacology & toxicology
Keywords:AntibioticMolecular dynamics simulationMolecular targetOritavancinPBPK modelingPharmacokinetics
PMID:39439008 Category: Date Added:2024-10-23
Dept Affiliation: CHEMBIOCHEM
1 Applied Bioinformatics Laboratory, Department of Biochemistry, Federal University Oye-Ekiti, Oye-Ekiti, Ekiti State, Nigeria. toluwase.fatoki@fuoye.edu.ng.
2 Department of Chemistry and Biochemistry, Concordia University, Montreal, QC, H4B 1R6, Canada. toluwase.fatoki@fuoye.edu.ng.
3 Applied Bioinformatics Laboratory, Department of Biochemistry, Federal University Oye-Ekiti, Oye-Ekiti, Ekiti State, Nigeria.

Description:

Introduction: Oritavancin is a semi-synthetic lipoglycopeptide antibiotic primarily used to treat serious infections caused by Gram-positive bacteria. The aim of this study was to elucidate possible molecular targets of oritavancin in human and microbes in relevance to its mechanism of action and model its pharmacokinetics for optimal dose selection in clinical practice.

Methods: Computational methods were used in this study which include target prediction, molecular docking, molecular dynamics simulation, pharmacokinetics prediction, and physiological-based pharmacokinetics (PBPK) modeling.

Results: Oritavancin was moderately soluble in water and did not permeate the blood-brain barrier. Seven molecular targets were identified in humans. Molecular docking results showed highest binding affinity of oritavancin with PI3-kinase p110-gamma subunit (-10.34 kcal/mol), followed by Acyl-CoA desaturase (-10.07 kcal/mol) and Cytochrome P450 2C19 (-8.384 kcal/mol). Oritavancin PBPK modelling in adult human showed that infusion has lower peak concentrations (Cmax) compared to bolus administration, with 1200 mg dose yielded Cmax of 16.559 mg/L, 800 mg dose yielded Cmax of 11.258 mg/L, and 200 mg over 3 days dose yielded Cmax of 7.526 mg/L. Notably, infusion gave extended half-life (t1/2) for all doses and slightly higher clearance rates compared to bolus, particularly for the 1200 mg and 800 mg doses. The results corroborated existing clinical pharmacokinetic data, and confirmed the model's accuracy and predictive capability.

Conclusion: This comprehensive computational study has provided invaluable insights into the pharmacological profile of Oritavancin, aiding its further development and optimization for clinical use.





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