Keyword search (4,164 papers available)

"Oncology" Keyword-tagged Publications:

Title Authors PubMed ID
1 A pilot randomized controlled trial comparing the feasibility and preliminary effects of different forms of exercise-related social support for older adult survivors of cancer Smith-Turchyn J; Sinclair S; O' Loughlin E; Innes A; Richardson J; Pillips S; Beauchamp M; Thabane L; Wrosch C; Sabiston CM; 41673350
PSYCHOLOGY
2 Deep learning-based feature discovery for decoding phenotypic plasticity in pediatric high-grade gliomas single-cell transcriptomics Abicumaran Uthamacumaran 40848317
PSYCHOLOGY
3 Translating Evidence-Based Self-Management Interventions Using a Stepped-Care Approach for Patients With Cancer and Their Caregivers: A Pilot Sequential Multiple Assignment Randomized Trial Design Lambert S; Moodie EEM; McCusker J; Lokhorst M; Harris C; Langmuir T; Belzile E; Laizner AM; Brahim LO; Wasserman S; Chehayeb S; Vickers M; Duncan L; Esplen MJ; Maheu C; Howell D; de Raad M; 39763142
PSYCHOLOGY
4 Cell Fate Dynamics Reconstruction Identifies TPT1 and PTPRZ1 Feedback Loops as Master Regulators of Differentiation in Pediatric Glioblastoma-Immune Cell Networks Abicumaran Uthamacumaran 39420135
PSYCHOLOGY
5 A Review of Mathematical and Computational Methods in Cancer Dynamics Uthamacumaran A; Zenil H; 35957879
PHYSICS
6 Dissecting cell fate dynamics in pediatric glioblastoma through the lens of complex systems and cellular cybernetics Abicumaran Uthamacumaran 35678918
PHYSICS
7 Acceptability of a structured diet and exercise weight loss intervention in breast cancer survivors living with an overweight condition or obesity: A qualitative analysis. Beckenstein H, Slim M, Kim H, Plourde H, Kilgour R, Cohen TR 33491338
PERFORM
8 Pain in long-term survivors of childhood cancer: A systematic review of the current state of knowledge and a call to action from the Children's Oncology Group. Schulte FSM, Patton M, Alberts NM, Kunin-Batson A, Olson-Bullis BA, Forbes C, Russell KB, Neville A, Heathcote LC, Karlson CW, Racine NM, Charnock C, Hocking MC, Banerjee P, Tutelman PR, Noel M, Krull KR 33112416
PSYCHOLOGY
9 A mixed-methods evaluation of a community physical activity program for breast cancer survivors. Sabiston CM, Fong AJ, O'Loughlin EK, Meterissian S 31217021
CONCORDIA

 

Title:Cell Fate Dynamics Reconstruction Identifies TPT1 and PTPRZ1 Feedback Loops as Master Regulators of Differentiation in Pediatric Glioblastoma-Immune Cell Networks
Authors:Abicumaran Uthamacumaran
Link:https://pubmed.ncbi.nlm.nih.gov/39420135/
DOI:10.1007/s12539-024-00657-4
Publication:Interdisciplinary sciences, computational life sciences
Keywords:Artificial intelligenceAttractorCancerCellular decision-makingCyberneticsData scienceDynamicsNetworksPrecision oncologySystems medicine
PMID:39420135 Category: Date Added:2024-10-18
Dept Affiliation: PSYCHOLOGY
1 Department of Physics (Alumni), Concordia University, Montréal, H4B 1R6, Canada. a_utham@live.concordia.ca.
2 Department of Psychology (Alumni), Concordia University, Montréal, H4B 1R6, Canada. a_utham@live.concordia.ca.
3 Oxford Immune Algorithmics, Reading, RG1 8EQ, UK. a_utham@live.concordia.ca.

Description:

Pediatric glioblastoma is a complex dynamical disease that is difficult to treat due to its multiple adaptive behaviors driven largely by phenotypic plasticity. Integrated data science and network theory pipelines offer novel approaches to studying glioblastoma cell fate dynamics, particularly phenotypic transitions over time. Here we used various single-cell trajectory inference algorithms to infer signaling dynamics regulating pediatric glioblastoma-immune cell networks. We identified GATA2, PTPRZ1, TPT1, MTRNR2L1/2, OLIG1/2, SOX11, FXYD6, SEZ6L, PDGFRA, EGFR, S100B, WNT, TNF α , and NF-kB as critical transition genes or signals regulating glioblastoma-immune network dynamics, revealing potential clinically relevant targets. Further, we reconstructed glioblastoma cell fate attractors and found complex bifurcation dynamics within glioblastoma phenotypic transitions, suggesting that a causal pattern may be driving glioblastoma evolution and cell fate decision-making. Together, our findings have implications for developing targeted therapies against glioblastoma, and the continued integration of quantitative approaches and artificial intelligence (AI) to understand pediatric glioblastoma tumor-immune interactions.





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