Keyword search (4,163 papers available)

"Proteomics" Keyword-tagged Publications:

Title Authors PubMed ID
1 Comparative proteomic analysis of self-compatible and self-incompatible genotypes of fennel (Foeniculum vulgare Mill.) Mirzahosseini Z; Shabani L; Sabzalian MR; Shojaiefar S; Dayanandan S; 40691524
BIOLOGY
2 New metabolic signature for Chagas disease reveals sex steroid perturbation in humans and mice Golizeh M; Nam J; Chatelain E; Jackson Y; Ohlund LB; Rasoolizadeh A; Camargo FV; Mahrouche L; Furtos A; Sleno L; Ndao M; 36590505
CHEMBIOCHEM
3 Evidence for ligninolytic activity of the ascomycete fungus Podospora anserina. van Erven G, Kleijn AF, Patyshakuliyeva A, Di Falco M, Tsang A, de Vries RP, van Berkel WJH, Kabel MA 32322305
CSFG
4 Proteomic Analysis of Morphologically Changed Tissues after Prolonged Dexamethasone Treatment Malkawi AK; Masood A; Shinwari Z; Jacob M; Benabdelkamel H; Matic G; Almuhanna F; Dasouki M; Alaiya AA; Rahman AMA; 31247941
CHEMBIOCHEM
5 Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing. Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA 30702898
BIOLOGY
6 Isolation and Preparation of Extracellular Proteins from Lignocellulose Degrading Fungi for Comparative Proteomic Studies Using Mass Spectrometry Robert J Gruninger 28417377
CSFG
7 Introduction: Overview of Fungal Genomics. de Vries RP, Grigoriev IV, Tsang A 29876804
CSFG

 

Title:Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.
Authors:Saito MABertrand EMDuffy MEGaylord DAHeld NAHervey WJHettich RLJagtap PDJanech MGKinkade DBLeary DHMcIlvin MRMoore EKMorris RMNeely BANunn BLSaunders JKShepherd AISymmonds NIWalsh DA
Link:https://www.ncbi.nlm.nih.gov/pubmed/30702898?dopt=Abstract
DOI:10.1021/acs.jproteome.8b00761
Publication:Journal of proteome research
Keywords:Metaproteomicsbest practicesbiogeochemistrydata sharingocean
PMID:30702898 Category:J Proteome Res Date Added:2019-06-07
Dept Affiliation: BIOLOGY
1 Woods Hole Oceanographic Institution , Woods Hole , Massachusetts 02543 , United States.
2 Department of Biology , Dalhousie University , Halifax , Nova Scotia B3H 4R2 , Canada.
3 School of Oceanography , University of Washington , Seattle , Washington 98195-7940 , United States.
4 U.S. Naval Research Laboratory , Washington , D.C. 20375 , United States.
5 Oak Ridge National Laboratory and Microbiology Department , University of Tennessee , Knoxville , Tennessee 37996 , United States.
6 Department of Biochemistry, Molecular Biology and Biophysics , University of Minnesota , Saint Paul , Minnesota 55108 , United States.
7 College of Charleston , Charleston , South Carolina 29424 , United States.
8 Department of Environmental Science , Rowan University , Glassboro , New Jersey 08028 , United States.
9 National Institute of Standards and Technology , Charleston , South Carolina 29412 , United States.
10 Department of Genome Sciences , University of Washington , Seattle , Washington 98195 , United States.
11 Department of Biology , Concordia University , Montreal , Quebec H4B 1R6 , Canada.

Description:

Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.

J Proteome Res. 2019 Apr 05;18(4):1461-1476

Authors: Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA

Abstract

Ocean metaproteomics is an emerging field enabling discoveries about marine microbial communities and their impact on global biogeochemical processes. Recent ocean metaproteomic studies have provided insight into microbial nutrient transport, colimitation of carbon fixation, the metabolism of microbial biofilms, and dynamics of carbon flux in marine ecosystems. Future methodological developments could provide new capabilities such as characterizing long-term ecosystem changes, biogeochemical reaction rates, and in situ stoichiometries. Yet challenges remain for ocean metaproteomics due to the great biological diversity that produces highly complex mass spectra, as well as the difficulty in obtaining and working with environmental samples. This review summarizes the progress and challenges facing ocean metaproteomic scientists and proposes best practices for data sharing of ocean metaproteomic data sets, including the data types and metadata needed to enable intercomparisons of protein distributions and annotations that could foster global ocean metaproteomic capabilities.

PMID: 30702898 [PubMed - in process]





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