Keyword search (4,164 papers available)

"Sequencing" Keyword-tagged Publications:

Title Authors PubMed ID
1 Capacitive bimetallic redox cycles and ligand-to-metal charge transfer to Boost denitrification with Ni sup II /sup /Fe sup II /sup -Gallic acid phenolic networks Yu S; Jin Y; Guo T; Li H; Liu W; Chen Z; Wang X; Guo J; 41707775
ENCS
2 Sequencing of a Dairy Isolate Unlocks em Kluyveromyces marxianus /em as a Host for Lactose Valorization Thornbury M; Knoops A; Summerby-Murray I; Dhaliwal J; Johnson S; Utomo JC; Joshi J; Narcross L; Remondetto G; Pouliot M; Whiteway M; Martin VJJ; 40629255
BIOLOGY
3 Widespread admixture blurs population structure and confounds Lake Trout (Salvelinus namaycush) conservation even in the genomic era Bernos TA; Gibelli J; Michaelides S; Won H; Jeon HB; Marin K; Boguski DA; Janjua MY; Gallagher CP; Howland KL; Fraser DJ; 39730611
BIOLOGY
4 Development of SNP Panels from Low-Coverage Whole Genome Sequencing (lcWGS) to Support Indigenous Fisheries for Three Salmonid Species in Northern Canada Beemelmanns A; Bouchard R; Michaelides S; Normandeau E; Jeon HB; Chamlian B; Babin C; Hénault P; Perrot O; Harris LN; Zhu X; Fraser D; Bernatchez L; Moore JS; 39552382
BIOLOGY
5 Amorphous Cu/Fe nanoparticles with tandem intracellular and extracellular electron capacity for enhancing denitrification performance and recovery of co-contaminant suppressed denitrification Fu J; Guo T; Li H; Liu W; Chen Z; Wang X; Guo J; 39542060
ENCS
6 Genome and secretome insights: unravelling the lignocellulolytic potential of Myceliophthora verrucosa for enhanced hydrolysis of lignocellulosic biomass Sharma G; Kaur B; Singh V; Raheja Y; Falco MD; Tsang A; Chadha BS; 38676717
CSFG
7 Candida albicans exhibits heterogeneous and adaptive cytoprotective responses to anti-fungal compounds Dumeaux V; Massahi S; Bettauer V; Mottola A; Dukovny A; Khurdia SS; Costa ACBP; Omran RP; Simpson S; Xie JL; Whiteway M; Berman J; Hallett MT; 37888959
BIOLOGY
8 A metagenomic-based study of two sites from the Barbadian reef system Simpson S; Bettauer V; Ramachandran A; Kraemer S; Mahon S; Medina M; Vallès Y; Dumeaux V; Vallès H; Walsh D; Hallett MT; 37009568
BIOLOGY
9 A resistome survey across hundreds of freshwater bacterial communities reveals the impacts of veterinary and human antibiotics use Kraemer SA; Barbosa da Costa N; Oliva A; Huot Y; Walsh DA; 36338036
BIOLOGY
10 Community-led risk analysis of direct-to-consumer whole-genome sequencing Samlali K; Thornbury M; Venter A; 35939839
ENCS
11 Neutral and adaptive drivers of genomic change in introduced brook trout (Salvelinus fontinalis) populations revealed by pooled sequencing Brookes B; Jeon HB; Derry AM; Post JR; Rogers SM; Humphries S; Fraser DJ; 35154655
BIOLOGY
12 ChIP-seq protocol for sperm cells and embryos to assess environmental impacts and epigenetic inheritance Lismer A; Lambrot R; Lafleur C; Dumeaux V; Kimmins S; 34159325
PERFORM
13 Tools and Techniques for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)/COVID-19 Detection Safiabadi Tali SH; LeBlanc JJ; Sadiq Z; Oyewunmi OD; Camargo C; Nikpour B; Armanfard N; Sagan SM; Jahanshahi-Anbuhi S; 33980687
IMAGING
14 Genetic Characterization of Mutations Related to Conidiophore Stalk Length Development in Aspergillus niger Laboratory Strain N402 Demirci E; Arentshorst M; Yilmaz B; Swinkels A; Reid ID; Visser J; Tsang A; Ram AFJ; 33959152
CSFG
15 Loss of Arp1, a putative actin-related protein, triggers filamentous and invasive growth and impairs pathogenicity in Candida albicans. Yao S, Feng Y, Islam A, Shrivastava M, Gu H, Lu Y, Sheng J, Whiteway M, Feng J 33363697
BIOLOGY
16 Genome Sequence Resource of Bacillus velezensis EB14, a native endophytic bacterial strain with biocontrol potential against the poplar stem canker causative pathogen, Sphaerulina musiva. Naik S, Tsang A, Ramanan US, Dayanandan S 33263425
BIOLOGY
17 Sediment Metagenomes as Time Capsules of Lake Microbiomes. Garner RE; Gregory-Eaves I; Walsh DA; 33148818
BIOLOGY
18 Functional Characterization of Clinical Isolates of the Opportunistic Fungal Pathogen Aspergillus nidulans. Bastos RW, Valero C, Silva LP, Schoen T, Drott M, Brauer V, Silva-Rocha R, Lind A, Steenwyk JL, Rokas A, Rodrigues F, Resendiz-Sharpe A, Lagrou K, Marcet-Houben M, Gabaldón T, McDonnell E, Reid I, Tsang A, Oakley BR, Loures FV, Almeida F, Huttenlocher A, Keller NP, Ries LNA, Goldman GH 32269156
CSFG
19 RNA sequencing reveals an additional Crz1-binding motif in promoters of its target genes in the human fungal pathogen Candida albicans. Xu H, Fang T, Omran RP, Whiteway M, Jiang L 31900175
BIOLOGY
20 Limited initial impacts of biomass harvesting on composition of wood-inhabiting fungi within residual stumps. Boué C, DeBellis T, Venier LA, Work TT, Kembel SW 31844564
BIOLOGY
21 Deficiencies in vesicular transport mediated by TRAPPC4 are associated with severe syndromic intellectual disability. Van Bergen NJ, Guo Y, Al-Deri N, Lipatova Z, Stanga D, Zhao S, Murtazina R, Gyurkovska V, Pehlivan D, Mitani T, Gezdirici A, Antony J, Collins F, Willis MJH, Coban Akdemir ZH, Liu P, Punetha J, Hunter JV, Jhangiani SN, Fatih JM, Rosenfeld JA, Posey JE, Gibbs RA, Karaca E, Massey S, Ranasinghe TG, Sleiman P, Troedson C, Lupski JR, Sacher M, Segev N, Hakonarson H, Christodoulou J 31794024
BIOLOGY
22 Start-up of oxygen-limited autotrophic partial nitrification-anammox process for treatment of nitrite-free wastewater in a single-stage hybrid bioreactor. Hosseinpour B, Saborimanesh N, Yerushalmi L, Walsh D, Mulligan CN 31378146
CSFG

 

Title:Neutral and adaptive drivers of genomic change in introduced brook trout (Salvelinus fontinalis) populations revealed by pooled sequencing
Authors:Brookes BJeon HBDerry AMPost JRRogers SMHumphries SFraser DJ
Link:https://pubmed.ncbi.nlm.nih.gov/35154655/
DOI:10.1002/ece3.8584
Publication:Ecology and evolution
Keywords:Salvelinus fontinalisadaptive differentiationgenetic diversityintroduced speciesneutral diversitywhole-genome sequencing
PMID:35154655 Category: Date Added:2022-02-14
Dept Affiliation: BIOLOGY
1 Department of Biology Concordia University Montréal QC Canada.
2 Département des sciences biologiques Université du Québec à Montréal Montréal QC Canada.
3 Department of Biology University of Calgary Calgary AB Canada.
4 Parks Canada Natural Resource Management Branch Radium Hot Springs BC Canada.

Description:

Understanding the drivers of successful species invasions is important for conserving native biodiversity and for mitigating the economic impacts of introduced species. However, whole-genome resolution investigations of the underlying contributions of neutral and adaptive genetic variation in successful introductions are rare. Increased propagule pressure should result in greater neutral genetic variation, while environmental differences should elicit selective pressures on introduced populations, leading to adaptive differentiation. We investigated neutral and adaptive variation among nine introduced brook trout (Salvelinus fontinalis) populations using whole-genome pooled sequencing. The populations inhabit isolated alpine lakes in western Canada and descend from a common source, with an average of ~19 (range of 7-41) generations since introduction. We found some evidence of bottlenecks without recovery, no strong evidence of purifying selection, and little support that varying propagule pressure or differences in local environments shaped observed neutral genetic variation differences. Putative adaptive loci analysis revealed nonconvergent patterns of adaptive differentiation among lakes with minimal putatively adaptive loci (0.001%-0.15%) that did not correspond with tested environmental variables. Our results suggest that (i) introduction success is not always strongly influenced by genetic load; (ii) observed differentiation among introduced populations can be idiosyncratic, population-specific, or stochastic; and (iii) conservatively, in some introduced species, colonization barriers may be overcome by support through one aspect of propagule pressure or benign environmental conditions.





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