| Keyword search (4,164 papers available) | ![]() |
"reproducibility" Keyword-tagged Publications:
| Title | Authors | PubMed ID | |
|---|---|---|---|
| 1 | MATES: A tool for appraising the completeness with which a meta-analysis has been reported | Morrison K; Pottier P; Pollo P; Ricolfi L; Williams C; Yang Y; Beillouin D; Cardoso SJ; Ferreira V; Gallagher B; Gan JL; Hao G; Keikha M; Kozlowsky-Suzuki B; Kiran Kumara TM; Latterini F; Leverkus AB; Macartney EL; Manrique SM; Martinig AR; Mizuno A; Nanayakkara S; Ntzani E; Ouédraogo DY; Pursell E; Simpson Z; Sleight H; Woon KS; Xia Z; Ghannad M; Grames E; Hennessy EA; IntHout J; Moher D; O' Dea RE; Page MJ; Whaley P; Lagisz M; Nakagawa S; | 41411971 BIOLOGY |
| 2 | Open-source platforms to investigate analytical flexibility in neuroimaging | Sanz-Robinson J; Wang M; McPherson B; Chatelain Y; Kennedy D; Glatard T; Poline JB; | 40800896 ENCS |
| 3 | Infants' Social Evaluation of Helpers and Hinderers: A Large-Scale, Multi-Lab, Coordinated Replication Study | Lucca K; Yuen F; Wang Y; Alessandroni N; Allison O; Alvarez M; Axelsson EL; Baumer J; Baumgartner HA; Bertels J; Bhavsar M; Byers-Heinlein K; Capelier-Mourguy A; Chijiiwa H; Chin CS; Christner N; Cirelli LK; Corbit J; Daum MM; Doan T; Dresel M; Exner A; Fei W; Forbes SH; Franchin L; Frank MC; Geraci A; Giraud M; Gornik ME; Wiesmann CG; Grossmann T; Hadley IM; Havron N; Henderson AME; Matzner EH; Immel BA; Jankiewicz G; Jedryczka W; Kanakogi Y; Kominsky JF; Lew-Williams C; Liberman Z; Liu L; Liu Y; Loeffler MT; Martin A; Mayor J; Meng X; Misiak M; Moreau D; Nencheva ML; Oña LS; Otálora Y; Paulus M; Pepe B; Pickron CB; Powell LJ; Proft M; Quinn AA; Rakoczy H; Reschke PJ; Roth-Hanania R; Rothmaler K; Schlegelmilch K; Schlingloff-Nemecz L; Schmuckler MA; Schuwerk T; Seehagen S; Sen HH; Shainy MR; Silvestri V; Soderstrom M; Sommerville J; Song HJ; Sorokowski P; Stutz SE; Su Y; Taborda-Osorio H; Tan AWM; Tatone D; Taylor-Partridge T; Tsang CKA; Urbanek A; Uzefovsky F; Visser I; Wertz AE; Williams M; Wolsey K; Wong TT; Woodward AM; Wu Y; Zeng Z; Zimmer L; Hamlin JK; | 39600132 PSYCHOLOGY |
| 4 | Establishing a framework for best practices for quality assurance and quality control in untargeted metabolomics | Mosley JD; Schock TB; Beecher CW; Dunn WB; Kuligowski J; Lewis MR; Theodoridis G; Ulmer Holland CZ; Vuckovic D; Wilson ID; Zanetti KA; | 38345679 CHEMBIOCHEM |
| 5 | Functional Synthetic Biology | Aldulijan I; Beal J; Billerbeck S; Bouffard J; Chambonnier G; Ntelkis N; Guerreiro I; Holub M; Ross P; Selvarajah V; Sprent N; Vidal G; Vignoni A; | 37073284 BIOLOGY |
| 6 | File-based localization of numerical perturbations in data analysis pipelines. | Salari A, Kiar G, Lewis L, Evans AC, Glatard T | 33269388 ENCS |
| 7 | Reproducibility of EEG-MEG fusion source analysis of interictal spikes: Relevance in presurgical evaluation of epilepsy. | Chowdhury RA, Pellegrino G, Aydin Ü, Lina JM, Dubeau F, Kobayashi E, Grova C | 29164737 PERFORM |
| Title: | Open-source platforms to investigate analytical flexibility in neuroimaging | ||||
| Authors: | Sanz-Robinson J, Wang M, McPherson B, Chatelain Y, Kennedy D, Glatard T, Poline JB | ||||
| Link: | https://pubmed.ncbi.nlm.nih.gov/40800896/ | ||||
| DOI: | 10.1162/IMAG.a.79 | ||||
| Publication: | Imaging neuroscience (Cambridge, Mass.) | ||||
| Keywords: | analytical flexibility; neuroimaging; open source; reproducibility; software; | ||||
| PMID: | 40800896 | Category: | Date Added: | 2025-08-13 | |
| Dept Affiliation: |
ENCS
1 NeuroDataScience-ORIGAMI Lab, McConnell Brain Imaging Centre, The Neuro (Montreal Neurological Institute-Hospital), Faculty of Medicine and Health Sciences, McGill University, Montreal, Quebec, Canada. 2 Department of Computer Science and Software Engineering, Concordia University, Montreal, Quebec, Canada. 3 Department of Psychiatry, University of Massachusetts Medical School, Worcester, MA, United States. 4 Krembil Centre for Neuroinformatics, Centre for Addiction and Mental Health, Toronto, Ontario, Canada. |
||||
Description: |
Researchers in brain imaging have access to a multitude of analysis tools, many of which carry out the same or similar tasks but yield different results when applied to the same data. This analytical flexibility often undermines reproducibility and raises concerns about the robustness of neuroimaging studies. However, the array of software packages to investigate and address analytical flexibility is decentralized, scattered, and not well documented. Consequently, researchers often lack the necessary information and protocols to buttress the reliability of their findings across analytical tools. This review catalogs and describes software platforms (i.e., software or computational libraries) that can be used to address result variability arising from computational pipelines and environments and explores the use of computing platforms and neuroimaging pipeline frameworks in addressing this issue. This study offers guidance to the research community on accessing, understanding, and utilizing these platforms to address brain imaging analytical flexibility. Additionally, the article provides specific recommendations tailored to different user groups, considering the tools they intend to use with these platforms and their computational constraints. |



