Keyword search (3,448 papers available)


File-based localization of numerical perturbations in data analysis pipelines.

Author(s): Salari A, Kiar G, Lewis L, Evans AC, Glatard T

BACKGROUND: Data analysis pipelines are known to be affected by computational conditions, presumably owing to the creation and propagation of numerical errors. While this process could play a major role in the current reproducibility crisis, the precise cau...

Article GUID: 33269388
Comparing perturbation models for evaluating stability of neuroimaging pipelines.

Author(s): Kiar G, de Oliveira Castro P, Rioux P, Petit E, Brown ST, Evans AC, Glatard T

With an increase in awareness regarding a troubling lack of reproducibility in analytical software tools, the degree of validity in scientific derivatives and their downstream results has become unclear. The nature of reproducibility issues may vary across ...

Article GUID: 32831546
Cyberinfrastructure for Open Science at the Montreal Neurological Institute.

Author(s): Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoul...

Front Neuroinform. 2016;10:53 Authors: Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoulos P, Rioux P, Ma...

Article GUID: 28111547
Best practices in data analysis and sharing in neuroimaging using MRI.

Author(s): Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Ess...

Nat Neurosci. 2017 Feb 23;20(3):299-303 Authors: Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, ...

Article GUID: 28230846
Boutiques: a flexible framework to integrate command-line applications in computing platforms.

Author(s): Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Brown ST, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da...

Gigascience. 2018 05 01;7(5): Authors: Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Brown ST, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da Silva R, Flandin...

Article GUID: 29718199
A Serverless Tool for Platform Agnostic Computational Experiment Management.

Author(s): Kiar G, Brown ST, Glatard T, Evans AC

Front Neuroinform. 2019;13:12 Authors: Kiar G, Brown ST, Glatard T, Evans AC

Article GUID: 30890927
Biomarkers, designs, and interpretations of resting-state fMRI in translational pharmacological research: A review of state-of-the-Art, challenges, and opportunities for studying brain chemistry.

Author(s): Khalili-Mahani N, Rombouts SA, van Osch MJ, Duff EP, Carbonell F, Nickerson LD, Becerra L, Dahan A, Evans AC, Soucy JP, Wise R, Zijdenbos AP...

Hum Brain Mapp. 2017 04;38(4):2276-2325 Authors: Khalili-Mahani N, Rombouts SA, van Osch MJ, Duff EP, Carbonell F, Nickerson LD, Becerra L, Dahan A, Evans AC, Soucy JP, Wise R, Zijdenbos AP, van G...

Article GUID: 28145075
Title:Best practices in data analysis and sharing in neuroimaging using MRI.
Authors:Nichols TE,  Das S,  Eickhoff SB,  Evans AC,  Glatard T,  Hanke M,  Kriegeskorte N,  Milham MP,  Poldrack RA,  Poline JB,  Proal E,  Thirion B,  Van Essen DC,  White T,  Yeo BT
Link:https://www.ncbi.nlm.nih.gov/pubmed/28230846?dopt=Abstract
DOI:10.1038/nn.4500
Category:Nat Neurosci
PMID:28230846
Dept Affiliation: IMAGING
1 University of Warwick, Coventry, UK.
2 McGill University, Montreal, Canada.
3 Montreal Neurological Institute, Montreal, Canada.
4 Institute of Neuroscience and Medicine (INM-1), Jülich Research Center, Jülich, Germany.
5 Institute for Systems Neuroscience, Medical Faculty, Heinrich-Heine University Düsseldorf, Düsseldorf, Germany.
6 Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada.
7 Otto-von-Guericke-University, Magdeburg, Germany.
8 Center for Behavioral Brain Sciences, Magdeburg, Germany.
9 MRC Cognition and Brain Sciences Unit, Cambridge, UK.
10 Child Mind Institute, New York, New York, USA.
11 Nathan S. Kline Institute for Psychiatric Research, Orangeburg, New York, USA.
12 Stanford University, Stanford, California, USA.
13 University of California, Berkeley, California, USA.
14 NEUROingenia Clinical and Research Center, Mexico City, Mexico.
15 Inria, Paris-Saclay University, Paris, France.
16 Washington University in St. Louis, St. Louis, Missouri, USA.
17 Erasmus University Medical Center, Rotterdam, The Netherlands.
18 National University of Singapore, Singapore.

Description:

Best practices in data analysis and sharing in neuroimaging using MRI.

Nat Neurosci. 2017 Feb 23;20(3):299-303

Authors: Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BT

Abstract

Given concerns about the reproducibility of scientific findings, neuroimaging must define best practices for data analysis, results reporting, and algorithm and data sharing to promote transparency, reliability and collaboration. We describe insights from developing a set of recommendations on behalf of the Organization for Human Brain Mapping and identify barriers that impede these practices, including how the discipline must change to fully exploit the potential of the world's neuroimaging data.

PMID: 28230846 [PubMed - indexed for MEDLINE]