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A compendium of multi-omic sequence information from the Saanich Inlet water column.

Author(s): Hawley AK, Torres-Beltrán M, Zaikova E, Walsh DA, Mueller A, Scofield M, Kheirandish S, Payne C, Pakhomova L, Bhatia M, Shevchuk O, Gies EA,...

Sci Data. 2017 10 31;4:170160 Authors: Hawley AK, Torres-Beltrán M, Zaikova E, Walsh DA, Mueller A, Scofield M, Kheirandish S, Payne C, Pakhomova L, Bhatia M, Shevchuk O, Gies EA, Fairley D, ...

Article GUID: 29087368
Title:A compendium of multi-omic sequence information from the Saanich Inlet water column.
Authors:Hawley AK,  Torres-Beltrán M,  Zaikova E,  Walsh DA,  Mueller A,  Scofield M,  Kheirandish S,  Payne C,  Pakhomova L,  Bhatia M,  Shevchuk O,  Gies EA,  Fairley D,  Malfatti SA,  Norbeck AD,  Brewer HM,  Pasa-Tolic L,  Del Rio TG,  Suttle CA,  Tringe S,  Hallam SJ
Link:https://www.ncbi.nlm.nih.gov/pubmed/29087368?dopt=Abstract
DOI:10.1038/sdata.2017.160
Category:Sci Data
PMID:29087368
Dept Affiliation: BIOLOGY
1 Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada V63 1Z3.
2 Department of Biology, Georgetown University, Washington, District Of Columbia 20057, USA.
3 Department of Biology, Concordia University, Montreal, Quebec, Canada H4B 1R6.
4 Earth, Ocean and Atmospheric Sciences, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
5 Department of Civil Engineering, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
6 Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA.
7 Biological and Computational Sciences Division, Pacific Northwest National Laboratory, Richland, Washington 99352, USA.
8 Department of Botany, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4.
9 Peter Wall Institute for Advanced Studies, University of British Columbia, Canada V6T 1Z2.
10 Genome Science and Technology Program, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z3.
11 Graduate Program in Bioinformatics, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z3.
12 ECOSCOPE Training Program, University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z3.

Description:

A compendium of multi-omic sequence information from the Saanich Inlet water column.

Sci Data. 2017 10 31;4:170160

Authors: Hawley AK, Torres-Beltrán M, Zaikova E, Walsh DA, Mueller A, Scofield M, Kheirandish S, Payne C, Pakhomova L, Bhatia M, Shevchuk O, Gies EA, Fairley D, Malfatti SA, Norbeck AD, Brewer HM, Pasa-Tolic L, Del Rio TG, Suttle CA, Tringe S, Hallam SJ

Abstract

Marine oxygen minimum zones (OMZs) are widespread regions of the ocean that are currently expanding due to global warming. While inhospitable to most metazoans, OMZs are hotspots for microbial mediated biogeochemical cycling of carbon, nitrogen and sulphur, contributing disproportionately to marine nitrogen loss and climate active trace gas production. Our current understanding of microbial community responses to OMZ expansion is limited by a lack of time-resolved data sets linking multi-omic sequence information (DNA, RNA, protein) to geochemical parameters and process rates. Here, we present six years of time-resolved multi-omic observations in Saanich Inlet, a seasonally anoxic fjord on the coast of Vancouver Island, British Columbia, Canada that undergoes recurring changes in water column oxygenation status. This compendium provides a unique multi-omic framework for studying microbial community responses to ocean deoxygenation along defined geochemical gradients in OMZ waters.

PMID: 29087368 [PubMed]