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Digital Microfluidics Chips for the Execution and Real-Time Monitoring of Multiple Ribozymatic Cleavage Reactions

Authors: Davis ANSamlali KKapadia JBPerreault JShih SCCKharma N


Affiliations

1 Department of Electrical and Computer Engineering, Concordia University, Montreal, Québec H3G 1M8, Canada.
2 Centre for Applied Synthetic Biology, Concordia University, Montréal, Québec H4B 1R6, Canada.
3 Armand-Frappier Health Biotechnology Center, Institut national de la recherche scientifique, Laval, Québec H7V 1B7, Canada.
4 Department of Biology, Concordia University, Montréal, Québec H4B 1R6, Canada.

Description

In this paper, we describe the design and performance of two digital microfluidics (DMF) chips capable of executing multiple ribozymatic reactions, with proper controls, in response to short single-stranded DNA inducers. Since the fluorescence output of a reaction is measurable directly from the chip, without the need for gel electrophoresis, a complete experiment involving up to eight reactions (per chip) can be carried out reliably, relatively quickly, and efficiently. The ribozymes can also be used as biosensors of the concentration of oligonucleotide inputs, with high sensitivity, low limits of quantification and of detection, and excellent signal-to-noise ratio. The presented chips are readily usable devices that can be used to automate, speed up, and reduce the costs of ribozymatic reaction experiments.

Links

PubMed: pubmed.ncbi.nlm.nih.gov/34514224/

DOI: 10.1021/acsomega.1c00239