Keyword search (4,163 papers available)

"Glatard T" Authored Publications:

Title Authors PubMed ID
1 Hierarchical Storage Management in User Space for Neuroimaging Applications Hayot-Sasson V; Glatard T; 41432812
ENCS
2 Open-source platforms to investigate analytical flexibility in neuroimaging Sanz-Robinson J; Wang M; McPherson B; Chatelain Y; Kennedy D; Glatard T; Poline JB; 40800896
ENCS
3 An analysis of performance bottlenecks in MRI preprocessing Dugré M; Chatelain Y; Glatard T; 40072903
ENCS
4 Predicting Parkinson's disease trajectory using clinical and functional MRI features: A reproduction and replication study Germani E; Bhagwat N; Dugré M; Gau R; Montillo AA; Nguyen KP; Sokolowski A; Sharp M; Poline JB; Glatard T; 39982930
ENCS
5 Registered report: Age-preserved semantic memory and the CRUNCH effect manifested as differential semantic control networks: An fMRI study Haitas N; Dubuc J; Massé-Leblanc C; Chamberland V; Amiri M; Glatard T; Wilson M; Joanette Y; Steffener J; 38917084
ENCS
6 Longitudinal brain structure changes in Parkinson's disease: A replication study Sokolowski A; Bhagwat N; Chatelain Y; Dugré M; Hanganu A; Monchi O; McPherson B; Wang M; Poline JB; Sharp M; Glatard T; 38295031
ENCS
7 Numerical stability of DeepGOPlus inference Gonzalez Pepe I; Chatelain Y; Kiar G; Glatard T; 38285635
ENCS
8 Data and Tools Integration in the Canadian Open Neuroscience Platform Poline JB; Das S; Glatard T; Madjar C; Dickie EW; Lecours X; Beaudry T; Beck N; Behan B; Brown ST; Bujold D; Beauvais M; Caron B; Czech C; Dharsee M; Dugré M; Evans K; Gee T; Ippoliti G; Kiar G; Knoppers BM; Kuehn T; Le D; Lo D; Mazaheri M; MacFarlane D; Muja N; O' Brien EA; O' Callaghan L; Paiva S; Park P; Quesnel D; Rabelais H; Rioux P; Legault M; Tremblay-Mercier J; Rotenberg D; Stone J; Strauss T; Zaytseva K; Zhou J; Duchesne S; Khan AR; Hill S; Evans AC; 37024500
ENCS
9 Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks Kiar G; Chatelain Y; de Oliveira Castro P; Petit E; Rokem A; Varoquaux G; Misic B; Evans AC; Glatard T; 34724000
ENCS
10 Multiple sclerosis lesions segmentation from multiple experts: the MICCAI 2016 challenge dataset Commowick O; Kain M; Casey R; Ameli R; Ferré JC; Kerbrat A; Tourdias T; Cervenansky F; Camarasu-Pop S; Glatard T; Vukusic S; Edan G; Barillot C; Dojat M; Cotton FI; 34563682
ENCS
11 The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging Paquola C; Royer J; Lewis LB; Lepage C; Glatard T; Wagstyl K; DeKraker J; Toussaint PJ; Valk SL; Collins DL; Khan A; Amunts K; Evans AC; Dickscheid T; Bernhardt BC; 34431476
IMAGING
12 An analysis of security vulnerabilities in container images for scientific data analysis Kaur B; Dugré M; Hanna A; Glatard T; 34080631
ENCS
13 File-based localization of numerical perturbations in data analysis pipelines. Salari A, Kiar G, Lewis L, Evans AC, Glatard T 33269388
ENCS
14 A Benchmark of Data Stream Classification for Human Activity Recognition on Connected Objects. Khannouz M; Glatard T; 33202905
ENCS
15 Comparing perturbation models for evaluating stability of neuroimaging pipelines. Kiar G, de Oliveira Castro P, Rioux P, Petit E, Brown ST, Evans AC, Glatard T 32831546
IMAGING
16 A Quantitative Comparison of Overlapping and Non-Overlapping Sliding Windows for Human Activity Recognition Using Inertial Sensors. Dehghani A, Sarbishei O, Glatard T, Shihab E 31752158
ENCS
17 Cyberinfrastructure for Open Science at the Montreal Neurological Institute. Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Fonov VS, Milot S, Leppert I, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC 28111547
IMAGING
18 Best practices in data analysis and sharing in neuroimaging using MRI. Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BT 28230846
IMAGING
19 The first MICCAI challenge on PET tumor segmentation. Hatt M, Laurent B, Ouahabi A, Fayad H, Tan S, Li L, Lu W, Jaouen V, Tauber C, Czakon J, Drapejkowski F, Dyrka W, Camarasu-Pop S, Cervenansky F, Girard P, Glatard T, Kain M, Yao Y, Barillot C, Kirov A, Visvikis D 29268169
IMAGING
20 Boutiques: a flexible framework to integrate command-line applications in computing platforms. Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Brown ST, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da Silva R, Flandin G, Girard P, Gorgolewski KJ, Guttmann CRG, Hayot-Sasson V, Quirion PO, Rioux P, Rousseau MÉ, Evans AC 29718199
ENCS
21 Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure. Commowick O, Istace A, Kain M, Laurent B, Leray F, Simon M, Pop SC, Girard P, Améli R, Ferré JC, Kerbrat A, Tourdias T, Cervenansky F, Glatard T, Beaumont J, Doyle S, Forbes F, Knight J, Khademi A, Mahbod A, Wang C, McKinley R, Wagner F, Muschelli J, Sweeney E, Roura E, Lladó X, Santos MM, Santos WP, Silva-Filho AG, Tomas-Fernandez X, Urien H, Bloch I, Valverde S, Cabezas M, Vera-Olmos FJ, Malpica N, Guttmann C, Vukusic S, Edan G, Dojat M, Styner M, Warfield SK, Cotton F, Barillot C 30209345
ENCS
22 A Serverless Tool for Platform Agnostic Computational Experiment Management. Kiar G, Brown ST, Glatard T, Evans AC 30890927
ENCS

 

Title:Multiple sclerosis lesions segmentation from multiple experts: the MICCAI 2016 challenge dataset
Authors:Commowick OKain MCasey RAmeli RFerré JCKerbrat ATourdias TCervenansky FCamarasu-Pop SGlatard TVukusic SEdan GBarillot CDojat MCotton FI
Link:https://pubmed.ncbi.nlm.nih.gov/34563682/
DOI:10.1016/j.neuroimage.2021.118589
Publication:NeuroImage
Keywords:
PMID:34563682 Category: Date Added:2021-09-27
Dept Affiliation: ENCS
1 Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, F-35000 Rennes, France. Electronic address: https://olivier.commowick.org.
2 Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, F-35000 Rennes, France.
3 Department of Radiology, Lyon Sud Hospital, Hospices Civils de Lyon, Lyon, France.
4 Univ Rennes, Inria, CNRS, Inserm - IRISA UMR 6074, Empenn ERL U1228, F-35000 Rennes, France; CHU Rennes, Department of Neuroradiology, F-35033, Rennes, France.
5 CHU Rennes, Department of Neurology, Rennes, F-35033, France.
6 CHU de Bordeaux, Service de Neuro-Imagerie, Bordeaux, France.
7 Univ Lyon, INSA-Lyon, Université Claude Bernard Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR 5220, Lyon, U1206, F-69621, France.
8 Department of Computer Science and Software Engineering, Concordia university, Montreal, Canada.

Description:

MRI plays a crucial role in multiple sclerosis diagnostic and patient follow-up. In particular, the delineation of T2-FLAIR hyperintense lesions is crucial although mostly performed manually - a tedious task. Many methods have thus been proposed to automate this task. However, sufficiently large datasets with a thorough expert manual segmentation are still lacking to evaluate these methods. We present a unique dataset for MS lesions segmentation evaluation. It consists of 53 patients acquired on 4 different scanners with a harmonized protocol. Hyperintense lesions on FLAIR were manually delineated on each patient by 7 experts with control on T2 sequence, and gathered in a consensus segmentation for evaluation. We provide raw and preprocessed data and a split of the dataset into training and testing data, the latter including data from a scanner not present in the training dataset. We strongly believe that this dataset will become a reference in MS lesions segmentation evaluation, allowing to evaluate many aspects: evaluation of performance on unseen scanner, comparison to individual experts performance, comparison to other challengers who already used this dataset, etc.





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