| Keyword search (4,163 papers available) | ![]() |
"Glatard T" Authored Publications:
| Title | Authors | PubMed ID | |
|---|---|---|---|
| 1 | Hierarchical Storage Management in User Space for Neuroimaging Applications | Hayot-Sasson V; Glatard T; | 41432812 ENCS |
| 2 | Open-source platforms to investigate analytical flexibility in neuroimaging | Sanz-Robinson J; Wang M; McPherson B; Chatelain Y; Kennedy D; Glatard T; Poline JB; | 40800896 ENCS |
| 3 | An analysis of performance bottlenecks in MRI preprocessing | Dugré M; Chatelain Y; Glatard T; | 40072903 ENCS |
| 4 | Predicting Parkinson's disease trajectory using clinical and functional MRI features: A reproduction and replication study | Germani E; Bhagwat N; Dugré M; Gau R; Montillo AA; Nguyen KP; Sokolowski A; Sharp M; Poline JB; Glatard T; | 39982930 ENCS |
| 5 | Registered report: Age-preserved semantic memory and the CRUNCH effect manifested as differential semantic control networks: An fMRI study | Haitas N; Dubuc J; Massé-Leblanc C; Chamberland V; Amiri M; Glatard T; Wilson M; Joanette Y; Steffener J; | 38917084 ENCS |
| 6 | Longitudinal brain structure changes in Parkinson's disease: A replication study | Sokolowski A; Bhagwat N; Chatelain Y; Dugré M; Hanganu A; Monchi O; McPherson B; Wang M; Poline JB; Sharp M; Glatard T; | 38295031 ENCS |
| 7 | Numerical stability of DeepGOPlus inference | Gonzalez Pepe I; Chatelain Y; Kiar G; Glatard T; | 38285635 ENCS |
| 8 | Data and Tools Integration in the Canadian Open Neuroscience Platform | Poline JB; Das S; Glatard T; Madjar C; Dickie EW; Lecours X; Beaudry T; Beck N; Behan B; Brown ST; Bujold D; Beauvais M; Caron B; Czech C; Dharsee M; Dugré M; Evans K; Gee T; Ippoliti G; Kiar G; Knoppers BM; Kuehn T; Le D; Lo D; Mazaheri M; MacFarlane D; Muja N; O' Brien EA; O' Callaghan L; Paiva S; Park P; Quesnel D; Rabelais H; Rioux P; Legault M; Tremblay-Mercier J; Rotenberg D; Stone J; Strauss T; Zaytseva K; Zhou J; Duchesne S; Khan AR; Hill S; Evans AC; | 37024500 ENCS |
| 9 | Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks | Kiar G; Chatelain Y; de Oliveira Castro P; Petit E; Rokem A; Varoquaux G; Misic B; Evans AC; Glatard T; | 34724000 ENCS |
| 10 | Multiple sclerosis lesions segmentation from multiple experts: the MICCAI 2016 challenge dataset | Commowick O; Kain M; Casey R; Ameli R; Ferré JC; Kerbrat A; Tourdias T; Cervenansky F; Camarasu-Pop S; Glatard T; Vukusic S; Edan G; Barillot C; Dojat M; Cotton FI; | 34563682 ENCS |
| 11 | The BigBrainWarp toolbox for integration of BigBrain 3D histology with multimodal neuroimaging | Paquola C; Royer J; Lewis LB; Lepage C; Glatard T; Wagstyl K; DeKraker J; Toussaint PJ; Valk SL; Collins DL; Khan A; Amunts K; Evans AC; Dickscheid T; Bernhardt BC; | 34431476 IMAGING |
| 12 | An analysis of security vulnerabilities in container images for scientific data analysis | Kaur B; Dugré M; Hanna A; Glatard T; | 34080631 ENCS |
| 13 | File-based localization of numerical perturbations in data analysis pipelines. | Salari A, Kiar G, Lewis L, Evans AC, Glatard T | 33269388 ENCS |
| 14 | A Benchmark of Data Stream Classification for Human Activity Recognition on Connected Objects. | Khannouz M; Glatard T; | 33202905 ENCS |
| 15 | Comparing perturbation models for evaluating stability of neuroimaging pipelines. | Kiar G, de Oliveira Castro P, Rioux P, Petit E, Brown ST, Evans AC, Glatard T | 32831546 IMAGING |
| 16 | A Quantitative Comparison of Overlapping and Non-Overlapping Sliding Windows for Human Activity Recognition Using Inertial Sensors. | Dehghani A, Sarbishei O, Glatard T, Shihab E | 31752158 ENCS |
| 17 | Cyberinfrastructure for Open Science at the Montreal Neurological Institute. | Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Fonov VS, Milot S, Leppert I, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC | 28111547 IMAGING |
| 18 | Best practices in data analysis and sharing in neuroimaging using MRI. | Nichols TE, Das S, Eickhoff SB, Evans AC, Glatard T, Hanke M, Kriegeskorte N, Milham MP, Poldrack RA, Poline JB, Proal E, Thirion B, Van Essen DC, White T, Yeo BT | 28230846 IMAGING |
| 19 | The first MICCAI challenge on PET tumor segmentation. | Hatt M, Laurent B, Ouahabi A, Fayad H, Tan S, Li L, Lu W, Jaouen V, Tauber C, Czakon J, Drapejkowski F, Dyrka W, Camarasu-Pop S, Cervenansky F, Girard P, Glatard T, Kain M, Yao Y, Barillot C, Kirov A, Visvikis D | 29268169 IMAGING |
| 20 | Boutiques: a flexible framework to integrate command-line applications in computing platforms. | Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Brown ST, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da Silva R, Flandin G, Girard P, Gorgolewski KJ, Guttmann CRG, Hayot-Sasson V, Quirion PO, Rioux P, Rousseau MÉ, Evans AC | 29718199 ENCS |
| 21 | Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure. | Commowick O, Istace A, Kain M, Laurent B, Leray F, Simon M, Pop SC, Girard P, Améli R, Ferré JC, Kerbrat A, Tourdias T, Cervenansky F, Glatard T, Beaumont J, Doyle S, Forbes F, Knight J, Khademi A, Mahbod A, Wang C, McKinley R, Wagner F, Muschelli J, Sweeney E, Roura E, Lladó X, Santos MM, Santos WP, Silva-Filho AG, Tomas-Fernandez X, Urien H, Bloch I, Valverde S, Cabezas M, Vera-Olmos FJ, Malpica N, Guttmann C, Vukusic S, Edan G, Dojat M, Styner M, Warfield SK, Cotton F, Barillot C | 30209345 ENCS |
| 22 | A Serverless Tool for Platform Agnostic Computational Experiment Management. | Kiar G, Brown ST, Glatard T, Evans AC | 30890927 ENCS |
| Title: | Numerical uncertainty in analytical pipelines lead to impactful variability in brain networks | ||||
| Authors: | Kiar G, Chatelain Y, de Oliveira Castro P, Petit E, Rokem A, Varoquaux G, Misic B, Evans AC, Glatard T | ||||
| Link: | pubmed.ncbi.nlm.nih.gov/34724000/ | ||||
| DOI: | 10.1371/journal.pone.0250755 | ||||
| Publication: | PloS one | ||||
| Keywords: | |||||
| PMID: | 34724000 | Category: | Date Added: | 2021-11-01 | |
| Dept Affiliation: |
ENCS
1 Montréal Neurological Institute, McGill University, Montréal, QC, Canada. 2 Department of Computer Science and Software Engineering, Concordia University, Montréal, QC, Canada. 3 Department of Computer Science, Université of Versailles, Versailles, France. 4 Exascale Computing Lab, Intel, Paris, France. 5 Department of Psychology and eScience Institute, University of Washington, Seattle, WA, United States of America. 6 Parietal Project-team, INRIA Saclay-ile de France, Paris, France. |
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Description: |
The analysis of brain-imaging data requires complex processing pipelines to support findings on brain function or pathologies. Recent work has shown that variability in analytical decisions, small amounts of noise, or computational environments can lead to substantial differences in the results, endangering the trust in conclusions. We explored the instability of results by instrumenting a structural connectome estimation pipeline with Monte Carlo Arithmetic to introduce random noise throughout. We evaluated the reliability of the connectomes, the robustness of their features, and the eventual impact on analysis. The stability of results was found to range from perfectly stable (i.e. all digits of data significant) to highly unstable (i.e. 0 - 1 significant digits). This paper highlights the potential of leveraging induced variance in estimates of brain connectivity to reduce the bias in networks without compromising reliability, alongside increasing the robustness and potential upper-bound of their applications in the classification of individual differences. We demonstrate that stability evaluations are necessary for understanding error inherent to brain imaging experiments, and how numerical analysis can be applied to typical analytical workflows both in brain imaging and other domains of computational sciences, as the techniques used were data and context agnostic and globally relevant. Overall, while the extreme variability in results due to analytical instabilities could severely hamper our understanding of brain organization, it also affords us the opportunity to increase the robustness of findings. |



