Keyword search (4,163 papers available)

"Methods Mol Biol" Category Publications:

Title Authors PubMed ID
1 Using Models to (Re-)Design Synthetic Circuits. McCallum G, Potvin-Trottier L 33405217
BIOLOGY
2 Computer-Aided Design of Active Pseudoknotted Hammerhead Ribozymes. Najeh S, Zandi K, Djerroud S, Kharma N, Perreault J 32712917
ENCS
3 Metabolomic and lipidomic analyses of chronologically aging yeast. Richard VR, Bourque SD, Titorenko VI 25213255
BIOLOGY
4 A Cell-Free Content Mixing Assay for SNARE-Mediated Multivesicular Body-Vacuole Membrane Fusion. Karim MA, Samyn DR, Brett CL 30317513
BIOLOGY
5 Visualization of SNARE-Mediated Organelle Membrane Hemifusion by Electron Microscopy. Mattie S, Kazmirchuk T, Mui J, Vali H, Brett CL 30317518
BIOLOGY
6 Identification of Genes Involved in the Degradation of Lignocellulose Using Comparative Transcriptomics. Gruninger RJ, Reid I, Forster RJ, Tsang A, McAllister TA 28417376
CSFG
7 Isolation and Preparation of Extracellular Proteins from Lignocellulose Degrading Fungi for Comparative Proteomic Studies Using Mass Spectrometry Robert J Gruninger 28417377
CSFG
8 Introduction: Overview of Fungal Genomics. de Vries RP, Grigoriev IV, Tsang A 29876804
CSFG
9 Fungal Genomic DNA Extraction Methods for Rapid Genotyping and Genome Sequencing. Bellemare A, John T, Marqueteau S 29876805
CSFG
10 Mass Spectrometry-Based Proteomics Marcos Rafael Di Falco 29876812
CSFG
11 Evolutionary Adaptation to Generate Mutants. de Vries RP, Lubbers R, Patyshakuliyeva A, Wiebenga A, Benoit-Gelber I 29876815
BIOLOGY
12 Manual Gene Curation and Functional Annotation. McDonnell E, Strasser K, Tsang A 29876819
CSFG
13 Evaluating Programs for Predicting Genes and Transcripts with RNA-Seq Support in Fungal Genomes. Reid I 29876820
CSFG
14 Phylogenetic Analysis of Protein Family. Song L, Wu S, Tsang A 29876824
CSFG

 

Title:A Cell-Free Content Mixing Assay for SNARE-Mediated Multivesicular Body-Vacuole Membrane Fusion.
Authors:Karim MASamyn DRBrett CL
Link:https://www.ncbi.nlm.nih.gov/pubmed/30317513?dopt=Abstract
DOI:10.1007/978-1-4939-8760-3_19
Publication:Methods in molecular biology (Clifton, N.J.)
Keywords:Content mixing assayLysosomeMembrane fusionMultivesicular body (MVB)Soluble NSF-associated protein receptor (SNARE)Vacuoleβ-Lactamase
PMID:30317513 Category:Methods Mol Biol Date Added:2019-06-07
Dept Affiliation: BIOLOGY
1 Department of Biology, Concordia University, Montréal, QC, Canada.
2 Department of Cell Biology, University of Alberta, Edmonton, AB, Canada.
3 Department of Biology, Concordia University, Montréal, QC, Canada. christopher.brett@concordia.ca.

Description:

A Cell-Free Content Mixing Assay for SNARE-Mediated Multivesicular Body-Vacuole Membrane Fusion.

Methods Mol Biol. 2019;1860:289-301

Authors: Karim MA, Samyn DR, Brett CL

Abstract

Endocytosis is a fundamental process underlying diverse eukaryotic physiology. The terminal stage of this process is membrane fusion between the perimeter membrane of a late endosome filled with intraluminal vesicles, or multivesicular body (MVB), and the lysosome membrane to facilitate catabolism of internalized biomaterials or surface polytopic proteins. To comprehensively understand the mechanisms underlying MVB-lysosome membrane fusion, we developed a quantitative, cell-free assay to study this SNARE-mediated event in molecular detail using Saccharomyces cerevisiae and its vacuolar lysosome, or vacuole, as models. This involves separately isolating organelles from two yeast strains each expressing a different complementary fusion probe targeted to the lumen of either MVBs or vacuoles. Isolated organelles are mixed in vitro under fusogenic conditions. Upon MVB-vacuole membrane fusion, luminal contents mix to facilitate probe interaction, reconstituting ß-lactamase activity recorded by a colorimetric enzyme activity assay. This method accommodates a multitude of approaches (e.g., genetics, addition of purified protein reagents) to study this process in isolation, and in theory could be repurposed to study other SNARE-mediated fusion events within cells.

PMID: 30317513 [PubMed - indexed for MEDLINE]





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